Transcription analysis of arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence

Research output: Contribution to journalJournal articleResearch

  • Eric van der Graaff
  • Rainer Schwacke
  • Anja Schneider
  • Marcelo Desimone
  • Ulf-Ingo Flügge
  • Reinhard Kunze
A comparative transcriptome analysis for successive stages of Arabidopsis (Arabidopsis thaliana) developmental leaf senescence (NS), darkening-induced senescence of individual leaves attached to the plant (DIS), and senescence in dark-incubated detached leaves (DET) revealed many novel senescence-associated genes with distinct expression profiles. The three senescence processes share a high number of regulated genes, although the overall number of regulated genes during DIS and DET is about 2 times lower than during NS. Consequently, the number of NS-specific genes is much higher than the number of DIS- or DET-specific genes. The expression profiles of transporters (TPs), receptor-like kinases, autophagy genes, and hormone pathways were analyzed in detail. The Arabidopsis TPs and other integral membrane proteins were systematically reclassified based on the Transporter Classification system. Coordinate activation or inactivation of several genes is observed in some TP families in all three or only in individual senescence types, indicating differences in the genetic programs for remobilization of catabolites. Characteristic senescence type-specific differences were also apparent in the expression profiles of (putative) signaling kinases. For eight hormones, the expression of biosynthesis, metabolism, signaling, and (partially) response genes was investigated. In most pathways, novel senescence-associated genes were identified. The expression profiles of hormone homeostasis and signaling genes reveal additional players in the senescence regulatory network.
Original languageEnglish
JournalPlant Physiology
Volume141
Issue number2
Pages (from-to)776-92
Number of pages17
ISSN0032-0889
DOIs
Publication statusPublished - Jun 2006
Externally publishedYes

    Research areas

  • Arabidopsis, Gene Expression Profiling, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Membrane Transport Proteins, Plant Growth Regulators, Plant Leaves, Transcription, Genetic

ID: 106391320