Galectin-3-dependent clusters or lattices are formed at the surface as well as in distinct organelles of eukaryotic cells. Incorporation into membrane proximal networks can fix glycoproteins within subcellular domains or sort them into distinct transport pathways. Here we analysed the effect of acidification on sugar binding and self-oligomerization of galectin-3. Using a fluorescence anisotropy assay we measured decreasing galectin-3 affinities to blood group GalNAcα1-3(Fucα1-2)Galβ1-4Glc under low pH conditions. Also binding to the strong interaction partner N-acetyl-D-lactosamine was lost at pH 5.0, while the less efficient ligand lactose was still able to bind. This indicates that variations in the binding specificity to distinct glycans can be observed by altering the pH. The formation of galectin-3-based complexes by interaction with the multivalent glycoproteins asialofetuin or transferrin was also obliterated at acidic pH and ligand binding affinity itself was modulated by oligomerization of the lectin. When galectin-3 was added to giant plasma membrane vesicles from the apical surface of epithelial cells pH-modulation could generate or eliminate the formation of membrane domains enriched with the neurotrophin receptor p75. In conclusion, our data suggest that the formation and composition of galectin-3 networks can be fine-tuned by changes in the environmental pH.